PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g047020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 344aa    MW: 38289.7 Da    PI: 7.0372
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g047020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.82e-701162822154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re            +    sa
  Csa07g047020.1 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnddkdhSGGGVSA 210
                     7899***********************************************************99977777777777777777666556677899 PP

          DUF702  86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     l +t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Csa07g047020.1 211 LVTTRVVNANSNSGLEMSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 282
                     9************9998776*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-64119281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-28121163IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26230280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNNNNNNN KQDHHQVDKD HHHQDKSNYL YLYKDEIYNN NKGFEIWPPQ  60
YFQQQEQQQH ASAPPNFYSF GMVPSGSSSN NNNNRSRSLY FNVVSDHESG GFTVTRQGGM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSTSS  180
RETQNTKRLR EASGGDNNDD KDHSGGGVSA LVTTRVVNAN SNSGLEMSQH LPPEVNSPAV  240
FRCVRVSSIE EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHLNL LASTATTTNV  300
EETATKAVAG NNNNGLMLDP SSLYPAQLNS FIAGTPFFTP PRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416444.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-178SHI-related sequence 5